Models

Filter Models by:
{
"items": [{"type":"modelling_analysis_type","label":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Cell cycle","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Enzymology","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Gene expression","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Gene regulatory network","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Genome scale","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Metabolic network","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Metabolism","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Signal transduction","subclassOf":"Modelling Analysis"},{"type":"modelling_analysis_type","label":"Translation","subclassOf":"Modelling Analysis"},{"id":"Model145","label":"Model145","display_content":"","type":"Model","item_id":145,"organism":["Homo sapiens"],"model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["Virtual Liver","HepatoSys","A: Cellular level"],"created_at":[2013],"contributor":["Martin Golebiewski","Christian B\u00f6lling","Nicolas Le Nov\u00e8re","Andreas Hoppe"],"tag":"(Missing value)"},{"id":"Model161","label":"Model161","display_content":"","type":"Model","item_id":161,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.3: Hepatocyte polarity"],"created_at":[2014],"contributor":["Bernd Binder","Hermann-Georg Holzh\u00fctter","Nikolaus Berndt"],"tag":"(Missing value)"},{"id":"Model178","label":"Model178","display_content":"","type":"Model","item_id":178,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":["PDF (Model description)"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A2.5: Integration of insulin and Wnt signalling in hepatocytes","B2.2: Importance of Wnt- and Hedgehog factors for hepatic stellate cells and hepatocellular metabolism"],"created_at":[2015],"contributor":["Iryna Ilkavets","Andreas Hecht"],"tag":["ODE model","Wnt/\u03b2-catenin"]},{"id":"Model162","label":"Model162","display_content":"","type":"Model","item_id":162,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.3: Hepatocyte polarity"],"created_at":[2014],"contributor":["Bernd Binder"],"tag":"(Missing value)"},{"id":"Model10","label":"Model10","display_content":"","type":"Model","item_id":10,"organism":["Mus musculus"],"model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Wolfgang Schmidt-Heck","Sebastian Zellmer","Rolf Gebhardt","Reinhard Guthke"],"tag":"(Missing value)"},{"id":"Model40","label":"Model40","display_content":"","type":"Model","item_id":40,"organism":"(Missing value)","model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Lutz Brusch","Marino Zerial","Yannis Kalaidzidis","Andreas Deutsch"],"tag":"(Missing value)"},{"id":"Model47","label":"Model47","display_content":"","type":"Model","item_id":47,"organism":"(Missing value)","model_type":["Partial differential equations (PDE)"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Lutz Brusch","Yannis Kalaidzidis","Bianca Habermann","Marino Zerial","Andreas Deutsch"],"tag":"(Missing value)"},{"id":"Model166","label":"Model166","display_content":"","type":"Model","item_id":166,"organism":["Mus musculus"],"model_type":"(Missing value)","model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":"(Missing value)","created_at":[2014],"contributor":["Lars Ole Schwen","Fabian Kiessling","Andrea Schenk"],"tag":"(Missing value)"},{"id":"Model31","label":"Model31","display_content":"","type":"Model","item_id":31,"organism":["Homo sapiens"],"model_type":["Stoichiometric model"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Christian B\u00f6lling","Hermann-Georg Holzh\u00fctter","Andreas Hoppe","Michael Weidlich","Matthias K\u00f6nig","Sascha Bulik"],"tag":"(Missing value)"},{"id":"Model32","label":"Model32","display_content":"","type":"Model","item_id":32,"organism":["Homo sapiens"],"model_type":["Stoichiometric model"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Christian B\u00f6lling","Hermann-Georg Holzh\u00fctter","Andreas Hoppe","Michael Weidlich","Matthias K\u00f6nig","Sascha Bulik"],"tag":"(Missing value)"},{"id":"Model119","label":"Model119","display_content":"","type":"Model","item_id":119,"organism":["Mus musculus"],"model_type":["Stoichiometric model"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":["Metabolism"],"project":["A1.1: Central liver metabolism and its regulation under nutritional challenges"],"created_at":[2013],"contributor":["Andreas Hoppe","Hermann-Georg Holzh\u00fctter"],"tag":"(Missing value)"},{"id":"Model77","label":"Model77","display_content":"","type":"Model","item_id":77,"organism":["Homo sapiens"],"model_type":["Stoichiometric model"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A1: Cellular metabolism"],"created_at":[2012],"contributor":["Andreas Dr\u00e4ger","Roland Keller","Stephanie Hoffmann"],"tag":"(Missing value)"},{"id":"Model182","label":"Model182","display_content":"","type":"Model","item_id":182,"organism":["Homo sapiens"],"model_type":"(Missing value)","model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":"(Missing value)","created_at":[2015],"contributor":["Lars Ole Schwen"],"tag":"(Missing value)"},{"id":"Model5","label":"Model5","display_content":"","type":"Model","item_id":5,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SBML"],"recommended_environment":["Copasi"],"modelling_analysis_type":["Metabolic network"],"project":["A1: Cellular metabolism","A2: Integration of Signalling Pathways in Hepatocellular Response","A3.1: Integration of signalling gene-regulatory and metabolic network models for guiding the experimental strategies","A3.4: Linking signalling to metabolic functions"],"created_at":[2012],"contributor":["Matthias K\u00f6nig","Sascha Bulik","Hermann-Georg Holzh\u00fctter"],"tag":"(Missing value)"},{"id":"Model157","label":"Model157","display_content":"","type":"Model","item_id":157,"organism":"(Missing value)","model_type":"(Missing value)","model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["C2: Organization of the sinusoidal system and the liver lobule - reference state","C6: Organization and function of the sinusoidal system and the liver lobule during regeneration after partial hepatectomy","D4: Regeneration and Liver Size"],"created_at":[2014],"contributor":["Lutz Brusch","Nadine Hohmann","Weiwei Wei","Uta Dahmen","Olaf Dirsch","Andreas Deutsch","Anja Vo\u00df\u2013B\u00f6hme"],"tag":"(Missing value)"},{"id":"Model99","label":"Model99","display_content":"","type":"Model","item_id":99,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SXML"],"recommended_environment":["MoBi"],"modelling_analysis_type":"(Missing value)","project":["E: Model integration","E4: Vertical integration across biological scales"],"created_at":[2012],"contributor":["Markus Krau\u00df","Lars K\u00fcpfer","J\u00f6rg Lippert"],"tag":"(Missing value)"},{"id":"Model108","label":"Model108","display_content":"","type":"Model","item_id":108,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A1: Cellular metabolism"],"created_at":[2012],"contributor":["Sascha Bulik","Nikolaus Berndt","Hermann-Georg Holzh\u00fctter"],"tag":"(Missing value)"},{"id":"Model160","label":"Model160","display_content":"","type":"Model","item_id":160,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.2: Cross-talk of signaling pathways and endocytic machinery in hepatocytes: Impact on cell polarity and presence of transporters"],"created_at":[2014],"contributor":["Lutz Brusch"],"tag":"(Missing value)"},{"id":"Model90","label":"Model90","display_content":"","type":"Model","item_id":90,"organism":"(Missing value)","model_type":"(Missing value)","model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.2: Cross-talk of signaling pathways and endocytic machinery in hepatocytes: Impact on cell polarity and presence of transporters","A3.3: Hepatocyte polarity","A3.5: The impact of cell polarity on metabolism detoxification and endocytosis","B: Communication of Hepatocytes and Non-Parenchymal Liver Cells","B2.3: Effect of hepatic stellate cells on hepatocyte polarity and transdifferentiation","B3: Intercellular communication through cell adhesion","C: Liver lobule level","C2: Organization of the sinusoidal system and the liver lobule - reference state","C5: Structural changes and functional consequences of the liver lobular/sinusoidal system during inflammation and fibrosis","C6: Organization and function of the sinusoidal system and the liver lobule during regeneration after partial hepatectomy","D4: Regeneration and Liver Size","E: Model integration","E2: Integration on the liver lobule scale: Image processing and mathematical modelling","E3: Horizontal integration on organ scale"],"created_at":[2012],"contributor":["Walter De Back","Andreas Deutsch","Lutz Brusch"],"tag":["Morpheus","multicellular","multiscale","modeling software","simulation software","modeling environment","systems biology","multicellular systems biology"]},{"id":"Model43","label":"Model43","display_content":"","type":"Model","item_id":43,"organism":["Mus musculus"],"model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Wolfgang Schmidt-Heck","Sebastian Zellmer","Rolf Gebhardt","Reinhard Guthke"],"tag":"(Missing value)"},{"id":"Model87","label":"Model87","display_content":"","type":"Model","item_id":87,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":["SBML"],"recommended_environment":["Copasi"],"modelling_analysis_type":"(Missing value)","project":["A2.4: Linking signalling pathways regulating liver regeneration and organ-size control","B1.2: Reciprocal effect of cell-cell communication on information processing in macrophages and hepatocytes"],"created_at":[2012],"contributor":["Katharina Beuke","Ursula Kummer","Sven Sahle"],"tag":["primary hepatocytes","SBML","kinetic data","LPS"]},{"id":"Model134","label":"Model134","display_content":"","type":"Model","item_id":134,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SXML"],"recommended_environment":["PK-Sim"],"modelling_analysis_type":"(Missing value)","project":["D1: Regulation of Blood Flow and Perfusion in the Liver","E3: Horizontal integration on organ scale","E4: Vertical integration across biological scales"],"created_at":[2013],"contributor":["Markus Krau\u00df","Lars K\u00fcpfer","Lars Ole Schwen"],"tag":"(Missing value)"},{"id":"Model133","label":"Model133","display_content":"","type":"Model","item_id":133,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SXML"],"recommended_environment":["PK-Sim"],"modelling_analysis_type":"(Missing value)","project":["D1: Regulation of Blood Flow and Perfusion in the Liver","E3: Horizontal integration on organ scale","E4: Vertical integration across biological scales"],"created_at":[2013],"contributor":["Markus Krau\u00df","Lars Ole Schwen","Lars K\u00fcpfer"],"tag":"(Missing value)"},{"id":"Model132","label":"Model132","display_content":"","type":"Model","item_id":132,"organism":["Homo sapiens"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SXML"],"recommended_environment":["PK-Sim"],"modelling_analysis_type":"(Missing value)","project":["D1: Regulation of Blood Flow and Perfusion in the Liver","E3: Horizontal integration on organ scale","E4: Vertical integration across biological scales"],"created_at":[2013],"contributor":["Markus Krau\u00df","Lars K\u00fcpfer","Lars Ole Schwen"],"tag":"(Missing value)"},{"id":"Model9","label":"Model9","display_content":"","type":"Model","item_id":9,"organism":["Mus musculus"],"model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":["Gene expression"],"project":["HepatoSys"],"created_at":[2011],"contributor":["Data From HepatoSys","Wolfgang Schmidt-Heck","Sebastian Zellmer","Rolf Gebhardt","Reinhard Guthke"],"tag":"(Missing value)"},{"id":"Model159","label":"Model159","display_content":"","type":"Model","item_id":159,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.2: Cross-talk of signaling pathways and endocytic machinery in hepatocytes: Impact on cell polarity and presence of transporters"],"created_at":[2014],"contributor":["Lutz Brusch"],"tag":"(Missing value)"},{"id":"Model181","label":"Model181","display_content":"","type":"Model","item_id":181,"organism":"(Missing value)","model_type":["Ordinary differential equations (ODE)"],"model_format":"(Missing value)","recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A: Cellular level"],"created_at":[2015],"contributor":["Matthias K\u00f6nig"],"tag":"(Missing value)"},{"id":"Model72","label":"Model72","display_content":"","type":"Model","item_id":72,"organism":"(Missing value)","model_type":["Graphical model"],"model_format":["XGMML"],"recommended_environment":["Cytoscape Web"],"modelling_analysis_type":"(Missing value)","project":["F1: The data management system"],"created_at":[2012],"contributor":["Martin Golebiewski","Jonathan Fuller"],"tag":"(Missing value)"},{"id":"Model118","label":"Model118","display_content":"","type":"Model","item_id":118,"organism":["Mus musculus"],"model_type":["Ordinary differential equations (ODE)"],"model_format":["SBML"],"recommended_environment":["Copasi"],"modelling_analysis_type":"(Missing value)","project":["Virtual Liver"],"created_at":[2013],"contributor":["Martin Golebiewski","Anastasia Bachmann","Philippe Lucarelli","Sven Sahle","Christoph Meyer","Ursula Klingm\u00fcller","Steven Dooley","Ursula Kummer"],"tag":"(Missing value)"},{"id":"Model180","label":"Model180","display_content":"","type":"Model","item_id":180,"organism":"(Missing value)","model_type":"(Missing value)","model_format":["SBML"],"recommended_environment":"(Missing value)","modelling_analysis_type":"(Missing value)","project":["A3.4: Linking signalling to metabolic functions","B5: Cell-cell communication influences detoxifying functions in hepatocytes"],"created_at":[2015],"contributor":["Andreas Dr\u00e4ger"],"tag":"(Missing value)"}]
}