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JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Authors: N. Rodriguez, A. Thomas, L. Watanabe, I. Y. Vazirabad, V. Kofia, H. F. Gomez, F. Mittag, J. Matthes, J. Rudolph, F. Wrzodek, E. Netz, A. Diamantikos, J. Eichner, R. Keller, C. Wrzodek, S. Frohlich, N. E. Lewis, C. J. Myers, N. Le Novere, B. O. Palsson, M. Hucka, A. Drager

PubMed ID: 26079347

Date Published: 17th Jun 2015

Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes

Journal: Bioinformatics

Citation: Bioinformatics :

Scales: Cell, Intercellular, Liver lobule, Liver and Organism

Abstract (Expand)

JSBML, the official pure Java programming library for the SBML format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented ...

Created: 22nd Jun 2015 at 17:56

JSBML: a flexible Java library for working with SBML

Authors: Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka

PubMed ID: 21697129

Date Published: 24th Jun 2011

Projects: A3.4: Linking signalling to metabolic functions

Journal: Bioinformatics

Citation: Bioinformatics 27(15): 2167-8

Scales: Not specified

Abstract (Expand)

SUMMARY: The specifications of the Systems Biology Markup Language (SBML) define standards for storing and exchanging computer models of biological processes in text files. In order to perform model ...

Created: 24th Jun 2011 at 10:36 Last updated: 24th Oct 2013 at 16:18